miRGator, miRGator v2.0 | Tool name | miRGator, miRGator v2.0 |
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| URL | 1. http://genome.ewha.ac.kr/miRGator/ 2. http://miRGator.kobic.re.kr |
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| Important features | An integrated database for functional annotation of microRNA that includes expression, regulation, function, pathway,pathological or disease terms as well as microRNA targeting (miRanda, picTar and TargetScan). |
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| Citations | Nam S, Kim B, Shin S, Lee S. miRGator: an integrated system for functional
annotation of microRNAs. Nucleic Acids Res. 2008 Jan;36(Database issue):D159-64.
Epub 2007 Oct 16. PubMed PMID: 17942429 |
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | FIND TARGET: integrated tools, DISEASE/ TISSUE SPECIFIC, SPECIES: mouse, 1. http://genome.ewha.ac.kr/miRGator/ 2. http://miRGator.kobic.re.kr 3. http://mirgator.kobic.re.kr:8080/MEXWebApp/, An integrated database for functional annotation of microRNA that includes expression- regulation- function- pathway-pathological or disease terms as well as microRNA targeting (miRanda- picTar and TargetScan). , Nam S- Kim B- Shin S- Lee S. miRGator: an integrated system for functional
annotation of microRNAs. Nucleic Acids Res. 2008 Jan;36(Database issue):D159-64.
Epub 2007 Oct 16. PubMed PMID: 17942429, 2008, 100, Online, I. SPECIES SUPPORTED INCLUDE: human- mouse II. QUERY OR INPUT DATA: 1. Dataset analysis: miRNA- Target gene (Gene symbol or alias or Entrez gene id)- Tissue- Disease- Perturbation. 2. Association analysis: 1. miRNA Set Analysis-select disease-miRNAs or DEmiRs(Up or down regulated- Input filter-tissue- disease- perturbation 2. Gene Set Analysis-anti-coexpressed genes with miRNA or mirna perturbed DEGs- or predicted miRNA targets 3. miRNA profile analysis- miRNA expression profile or miRNA phenotype profile 3. miRNA set analysis and Gene set analysis- Add mirna set or gene set III. OUTPUT DATA: depending on the type of analysis chosen the results are related to microRNA expressional profile- gene expression profile under altered microRNA states- details of validated and predicted microRNA targets and microRNA disease associations., Cho S- Jun Y- Lee S- Choi HS- Jung S- Jang Y- Park C- Kim S- Lee S- Kim W.
miRGator v2.0: an integrated system for functional investigation of microRNAs.
Nucleic Acids Res. 2011 Jan;39(Database issue):D158-62. Epub 2010 Nov 9. PubMed
PMID: 21062822. |
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